Slamdunk timeseries example QA
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2016-12-29, 18:12 based on data in:
/clustertmp/slamdunk/timeseries_example_v0.2.2-dev
General Statistics
Showing 6/6 rows and 4/4 columns.Sample Name | Counted | Retained | Mapped | Sequenced |
---|---|---|---|---|
day1_timepoint_rep1 | 17.69 M | 12.28 M | 18.53 M | 20.70 M |
day1_timepoint_rep2 | 19.68 M | 11.44 M | 17.75 M | 20.36 M |
day1_timepoint_rep3 | 25.15 M | 14.41 M | 21.12 M | 23.77 M |
zero_timepoint_rep1 | 24.41 M | 13.00 M | 18.69 M | 21.00 M |
zero_timepoint_rep2 | 20.60 M | 11.66 M | 17.54 M | 19.61 M |
zero_timepoint_rep3 | 26.93 M | 14.46 M | 21.77 M | 27.57 M |
Slamdunk
Slamdunk is a tool to analyze SLAMSeq data.
Filter statistics
This table shows the number of reads filtered with each filter criterion during filtering phase of slamdunk.
Showing 6/6 rows and 5/5 columns.Sample Name | Mapped | Multimap-Filtered | NM-Filtered | Identity-Filtered | MQ-Filtered |
---|---|---|---|---|---|
day1_timepoint_rep1 | 18.53 M | 2.20 M | 0.00 M | 4.05 M | 0.00 M |
day1_timepoint_rep2 | 17.75 M | 2.58 M | 0.00 M | 3.73 M | 0.00 M |
day1_timepoint_rep3 | 21.12 M | 3.08 M | 0.00 M | 3.63 M | 0.00 M |